Sadegh Sulaimany

Bioinformatics and Biological Network Analysis (Spring 2021)

Syllabus

Reference 1: An introduction to Bioinformatics algorithms

Supplementary Sources: 1, 2 

Handouts

• Brief biology basics intro 
• Bioinformatics
• Session 2 (Dynamic Prog. -Sequence Alignment)
• Session 3- (DNA Microarray Analysis) Interactive intro - Slides 
• Session 4 - Molecular Evolution - Selected News - Slides 
• Session 5- RNA Structure Prediction 
• Session 6- DNA Sequencing  - Cayley formula 
• Biological network Analysis
• Session 7- Topological characteristics of biological networks 
• Session 8- Some popular methods of biological network analysis
• Session 9- Investigating some popular networks - PPI
• Session 10- Investigating some popular networks - GRN
• Session 11- Biological networks visualization
• Session 12 - Biological networks literature mining

Final Project

• Research titles
• Appointment setting 

Homeworks

Useful links

• eTBLAST (Text similarity search engine)
• Sequence alignment program
• Amino Acids good explained